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COVID-19 in Children Linked to Reduced Gut Microbiota Diversity, Altered Immune Response

Jul 31, 2025

In the first large-scale pediatric study exploring the connection between the gut microbiome immune response and COVID-19 symptoms researchers from Duke University Drs. Jatin Roper and Neeraj Surana present compelling evidence that gut microbes may play a critical role in modulating the severity of COVID-19 in children. Published on July 16 in the Journal of Infectious Diseases and supported by the Duke Department of Medicine the study underscores how gut microbiota can influence immune signaling particularly through molecules like interferons.

The team found that children with symptomatic COVID-19 had significantly lower gut microbial diversity compared to asymptomatic children or those who were uninfected. This reduction in diversity could compromise the gut’s ability to regulate immune function effectively.

One of the study’s most striking findings was the reduced activity in microbial pathways responsible for tyrosine biosynthesis an essential amino acid pathway alongside diminished levels of interferon-alpha a vital molecule in antiviral defense. These results suggest a direct link between gut microbial metabolism and the immune system’s ability to fight viral infections like COVID-19 opening the door to microbiome-targeted therapies for children.

Promise for Microbiome-Driven Treatments

While many have moved on from the pandemic COVID-19 continues to pose serious health risks especially for children said Dr. Jatin Roper associate professor in the Division of Gastroenterology. Our findings contribute to growing evidence that severe COVID-19 is linked to disrupted metabolic pathways in gut microbes. This insight could enhance risk prediction and pave the way for microbiome-based therapies targeting severe COVID-19 and other viral illnesses in children.

Dr. Neeraj Surana a pediatric infectious disease specialist added This research advances our understanding of how the gut microbiome shapes immune responses in children. The implications go far beyond COVID-19 offering valuable clues about how gut microbes influence vulnerability to viral infections and how we might harness them for therapeutic interventions.

While children have generally experienced milder cases of COVID-19 the biological basis for this resilience remains unclear. Previous pediatric studies have noted changes in the gut microbiome but they were limited by small sample sizes and focused mainly on identifying bacterial species through taxonomic profiling.

In contrast the Duke study utilized shotgun metagenomic sequencing allowing researchers to examine not just the composition but also the function of gut microbes. By also measuring plasma cytokine levels the study offered a more detailed view of the complex interactions between the microbiome and the immune system.

Source: https://medicine.duke.edu/news/covid-19-children-linked-reduced-gut-microbiota-diversity-altered-immune-response


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